You can always crop the image to an arbitrary shape, but that is a metaphorical cookie cutter approach. You end up with scraps of image on the sides, and a thin cookie. Multi shot panoramas are more like making a double, triple, or centi-(?) batch of cookie dough, and then squishing it around your kitchen to fill every (rectangular) corner!
With the Gigapan you choose the upper left and lower right corners for your image. You can make a wide short image, or a tall skinny one, or anything in between!
You also get to think about the resolution of your image. You could simply shoot everything in your highest zoom, but that seems wasteful. Instead you can decide things like 'how many pixels do I want for every inch of the subject?'
Here are some notes on some of those calculations.
Angle = 2 * Arc Tan( d / 2f ) where d = size of the sensor and f is the focal length of the lens. doing everything in 35mm equivalents means the 'sensor' is 36mm x 24mm You can determine how much will be included in a given angle of view at a given distance with this included = d * sin(a) where d = distance and a = angle of view. Example, the 4.8 degree horizontal angle of view of a 432 mm lens at 100 feet included = 100 * sin(4.8) = 8.32 feet (note: because of overlap this is not the same as the number of images you will need!)
pixels per inch = p / (d * sin(a)) / 12 where p = horizontal or vertical pixel resolution of the image d = distance to subject a = horizontal or vertical angle of view Example: a 432 mm lens has a 4.8 degree Angle of View. In the 8 MP Canon S5IS that is pixels per inch = 3264 / ( 100 * sin(4.8)) /12 pixels per inch = 32.7
Assume we have an approximate known distance, say red blood cells which are 6-8 microns across. That is a lot
of range, but we can work with it. Select a few RBC which seem 'typical' and measure how many pixels wide they are.
Say they are 12 pixels wide, then we have
12 pixels/ 8-10 microns
The range then is 1 pixel maps to 1.5-2 microns.